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User Guide
Installation Guide
Input Data Format Specification
Data Pipeline & Normalization
Model Inference
Command-Line Interface (CLI) Reference
Model Training
Data Splitting Strategy
Hyperparameter Optimization Guide
Model Architectures Guide
Evaluation & Metrics Guide
Output Format Specification
Tutorials
Predicting T Cell Expansion from scRNA-seq Data
Preparing Training Data from Paired scRNA/TCR-seq
Model Inference & Evaluation Pipeline
Embedding Visualization
Contributing to scXpand
Model Sharing
API Reference
scxpand
scxpand.autoencoders
scxpand.autoencoders.ae_losses
scxpand.autoencoders.ae_model_output
scxpand.autoencoders.ae_models
scxpand.autoencoders.ae_modules
scxpand.autoencoders.ae_params
scxpand.autoencoders.ae_trainer
scxpand.autoencoders.run_ae_train
scxpand.core
scxpand.core.evaluation
scxpand.core.inference
scxpand.core.inference_results
scxpand.core.model_types
scxpand.core.prediction
scxpand.data_util
scxpand.data_util.constants
scxpand.data_util.data_format
scxpand.data_util.data_splitter
scxpand.data_util.dataloaders
scxpand.data_util.dataset
scxpand.data_util.prepare_data_for_train
scxpand.data_util.statistics
scxpand.data_util.transforms
scxpand.hyperopt
scxpand.hyperopt.hyperopt_optimizer
scxpand.hyperopt.hyperopt_utils
scxpand.hyperopt.param_grids
scxpand.lightgbm
scxpand.lightgbm.lightgbm_params
scxpand.lightgbm.run_lightgbm_
scxpand.linear
scxpand.linear.linear_params
scxpand.linear.linear_trainer
scxpand.linear.model_manager
scxpand.linear.sklearn_utils
scxpand.main
scxpand.mlp
scxpand.mlp.mlp_losses
scxpand.mlp.mlp_model
scxpand.mlp.mlp_params
scxpand.mlp.mlp_trainer
scxpand.mlp.run_mlp_train
scxpand.pretrained
scxpand.pretrained.download_manager
scxpand.pretrained.inference_api
scxpand.pretrained.model_registry
scxpand.util
scxpand.util.classes
scxpand.util.general_util
scxpand.util.inference_utils
scxpand.util.io
scxpand.util.logger
scxpand.util.metrics
scxpand.util.model_constants
scxpand.util.model_loading
scxpand.util.model_registry
scxpand.util.model_type
scxpand.util.plots
scxpand.util.train_logger
scxpand.util.train_util
scxpand.util.training_utils
.rst
.pdf
scxpand.lightgbm
scxpand.lightgbm
#
Modules
lightgbm_params
run_lightgbm_
